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Wed 3 Feb 2016
09:30 - 17:30

Venue: Bioinformatics Training Room, Craik-Marshall Building, Downing Site

Provided by: Bioinformatics


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Analysis of mapped NGS data with SeqMonk
BeginnersPrerequisites

Wed 3 Feb 2016

Description

SeqMonk is a graphical program for the visualisation and analysis of large mapped sequencing datasets such as ChIP-Seq, RNA-Seq, and BS-Seq.

The program allows you to view your reads against an annotated genome and to quantitate and filter your data to let you identify regions of interest. It is a friendly way to explore and analysis very large datasets.

This course provides an introduction to the main features of SeqMonk and will run through the analysis of a couple of different datasets to show what sort of analysis options it provides.

Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

Target audience
  • Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
  • Further details regarding eligibility criteria are available here
  • Further details regarding the charging policy are available here
Prerequisites
  • A basic understanding of next generation sequencing and its applications
Sessions

Number of sessions: 1

# Date Time Venue Trainers
1 Wed 3 Feb 2016   09:30 - 17:30 09:30 - 17:30 Bioinformatics Training Room, Craik-Marshall Building, Downing Site map Simon Andrews,  Bhupinder Virk
Topics covered

Bioinformatics, ChIP-seq, Data visualisation, Data handing, Data mining, Exome sequencing, RNA-Seq

Format

Presentations, demonstrations and practicals

Duration

1

Frequency

A number of times per year

Related courses
Theme
Specialized Training

Booking / availability