Analysis of mapped NGS data with SeqMonk BeginnersPrerequisites
SeqMonk is a graphical program for the visualisation and analysis of large mapped sequencing datasets such as ChIP-Seq, RNA-Seq, and BS-Seq.
The program allows you to view your reads against an annotated genome and to quantitate and filter your data to let you identify regions of interest. It is a friendly way to explore and analysis very large datasets.
This course provides an introduction to the main features of SeqMonk and will run through the analysis of a couple of different datasets to show what sort of analysis options it provides.
Further information is available here.
Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.
- Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
- Further details regarding eligibility criteria are available here
- Further details regarding the charging policy are available here
- A basic understanding of next generation sequencing and its applications
Number of sessions: 1
# | Date | Time | Venue | Trainers | |
---|---|---|---|---|---|
1 | Wed 3 Feb 2016 09:30 - 17:30 | 09:30 - 17:30 | Bioinformatics Training Room | map | Simon Andrews, Bhupinder Virk |
Bioinformatics, ChIP-seq, Data visualisation, Data handing, Data mining, Exome sequencing, RNA-Seq
Presentations, demonstrations and practicals
1
A number of times per year
- Introduction to RNA-seq and ChIP-seq data analysis
- Analysis of RNA-seq data with Bioconductor
- Introduction to high-throughput sequencing data analysis
Booking / availability