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- Select training provider - (Bioinformatics)
Wed 1 May - Thu 2 May 2024
09:30 - 13:30

Venue: Bioinformatics Training Room, Craik-Marshall Building

Provided by: Bioinformatics


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Reproducible Research with R (IN-PERSON)
Prerequisites

Wed 1 May - Thu 2 May 2024

Description

This course introduces concepts about reproducibility that can be used when you are programming in R. We will explore how to create notebooks - a way to integrate your R analyses into reports using Rmarkdown. The course also introduces the concept of version control. We will learn how to create a repository on GitHub and how to work together on the same project collaboratively without creating conflicting versions of files.


If you do not have a University of Cambridge Raven account please book or register your interest here.

Additional information
  • ♿ The training room is located on the first floor and there is currently no wheelchair or level access.
  • Our courses are only free for registered University of Cambridge students. All other participants will be charged according to our charging policy.
  • Attendance will be taken on all courses and a charge is applied for non-attendance, including for University of Cambridge students. After you have booked a place, if you are unable to attend any of the live sessions, please email the Bioinfo Team.
  • Further details regarding eligibility criteria are available here.
  • Guidance on visiting Cambridge and finding accommodation is available here.
Target audience
  • Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
Prerequisites

The Introduction to R for Biologists course and/or have a working knowledge of R.

Sessions

Number of sessions: 2

# Date Time Venue Trainers
1 Wed 1 May   09:30 - 13:30 09:30 - 13:30 Bioinformatics Training Room, Craik-Marshall Building map Mark Fernandes,  Dr Soumya Banerjee,  J. Su
2 Thu 2 May   09:30 - 13:30 09:30 - 13:30 Bioinformatics Training Room, Craik-Marshall Building map Mark Fernandes,  Dr Soumya Banerjee,  J. Su
Topics covered

R Programming Language, GitHub, Version Control, Rmarkdown, Notebooks, Reproducibility

Objectives

During this course you will learn about:

  • Literate Programming/Notebooks
  • Version Control
Aims

After this course you should be able to:

  • Create notebooks and reports in R
  • Create a repository on GitHub
  • Share your project in a team and how to work on the same project collaboratively
Format

Presentations, demonstrations and practicals

Registration Fees
  • Free for registered University of Cambridge students
  • £ 60/day for all University of Cambridge staff, including postdocs, temporary visitors (students and researchers) and participants from Affiliated Institutions. Please note that these charges are recovered by us at the Institutional level
  • It remains the participant's responsibility to acquire prior approval from the relevant group leader, line manager or budget holder to attend the course. It is requested that people booking only do so with the agreement of the relevant party as costs will be charged back to your Lab Head or Group Supervisor.
  • £ 60/day for all other academic participants from external Institutions and charitable organizations. These charges must be paid at registration
  • £ 120/day for all Industry participants. These charges must be paid at registration
  • Further details regarding the charging policy are available here
Duration

1

Related courses
Theme
Reproducibility and Data Management

Booking / availability