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Tue 3 Nov 2015
09:30 - 13:00

Venue: Bioinformatics Training Room, Craik-Marshall Building, Downing Site

Provided by: Bioinformatics


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EMBL-EBI: Interactions & Pathways - Reactome
Prerequisites

Tue 3 Nov 2015

Description

This workshop will give an introduction to the Reactome pathway database website and analysis tools, using short presentations and practical hands-on exercises. The session will also explain where to learn more, get help, and how to become involved in adding more pathway information to Reactome.

Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

Target audience
  • This workshop is aimed at researchers who want to learn about pathways or identify pathways relevant to a set of molecules
  • Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
  • Further details regarding eligibility criteria are available here
  • Further details regarding the charging policy are available here
Prerequisites

No previous bioinformatics experience is required, but an undergraduate level understanding of biology would be an advantage

Sessions

Number of sessions: 1

# Date Time Venue Trainer
1 Tue 3 Nov 2015   09:30 - 13:00 09:30 - 13:00 Bioinformatics Training Room, Craik-Marshall Building, Downing Site map Steve Jupe
Objectives

After this course you should be able to:

  • Navigate the Reactome Pathway browser, search pathways and understand pathway diagrams
  • Find proteins or compounds represented in Reactome
  • Extend Reactome pathways with protein-protein or protein-compound interactions from relevant databases or with your own interactions data
  • Map your own lists of genes, proteins, or compounds to Reactome pathways and identifying the pathways that are over-represented
  • Visualise pathway expression levels using your own microarray or protein dataset
Aims

During this course you will learn about:

  • The need for pathway databases such as Reactome
  • Reactome pathways diagrams
  • Navigating the Pathway browser
  • Analysing your own data with Reactome
Format

Presentations, demonstrations and practicals

Duration

One half day session

Frequency

A number of times per year

Related courses
Theme
Databases and Services

Booking / availability