EMBL-EBI: Interactions & Pathways - Reactome Prerequisites
This workshop will give an introduction to the Reactome pathway database website and analysis tools, using short presentations and practical hands-on exercises. The session will also explain where to learn more, get help, and how to become involved in adding more pathway information to Reactome.
Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below.
Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.
- This workshop is aimed at researchers who want to learn about pathways or identify pathways relevant to a set of molecules
- Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
- Further details regarding eligibility criteria are available here
- Further details regarding the charging policy are available here
No previous bioinformatics experience is required, but an undergraduate level understanding of biology would be an advantage
Number of sessions: 1
# | Date | Time | Venue | Trainer | |
---|---|---|---|---|---|
1 | Tue 3 Nov 2015 09:30 - 13:00 | 09:30 - 13:00 | Bioinformatics Training Room, Craik-Marshall Building | map | Steve Jupe |
After this course you should be able to:
- Navigate the Reactome Pathway browser, search pathways and understand pathway diagrams
- Find proteins or compounds represented in Reactome
- Extend Reactome pathways with protein-protein or protein-compound interactions from relevant databases or with your own interactions data
- Map your own lists of genes, proteins, or compounds to Reactome pathways and identifying the pathways that are over-represented
- Visualise pathway expression levels using your own microarray or protein dataset
During this course you will learn about:
- The need for pathway databases such as Reactome
- Reactome pathways diagrams
- Navigating the Pathway browser
- Analysing your own data with Reactome
Presentations, demonstrations and practicals
One half day session
A number of times per year
- EMBL-EBI: Introduction to EMBL-EBI resources
- EMBL-EBI: An Introduction to Sequence Searching
- EMBL-EBI: Transcriptomics Data and Tools (ONLINE LIVE TRAINING)
- EMBL-EBI: Network Analysis with Cytoscape (ONLINE LIVE TRAINING)
- Using the Ensembl Genome Browser (ONLINE LIVE TRAINING)
- EMBL-EBI: Protein Sequence Databases with UniProt
- EMBL-EBI: Interactions & Pathways - IntAct & Complex Portal
- EMBL-EBI: Ontologies in life sciences - examples from GO and EFO
Booking / availability