Analysis of mapped NGS data with SeqMonk

BeginnersPrerequisites

SeqMonk is a graphical program for the visualisation and analysis of large mapped sequencing datasets such as ChIP-Seq, RNA-Seq, and BS-Seq.

The program allows you to view your reads against an annotated genome and to quantitate and filter your data to let you identify regions of interest. It is a friendly way to explore and analysis very large datasets.

This course provides an introduction to the main features of SeqMonk and will run through the analysis of a couple of different datasets to show what sort of analysis options it provides.

Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

• Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
• Further details regarding eligibility criteria are available here
• Further details regarding the charging policy are available here

• A basic understanding of next generation sequencing and its applications

Number of sessions: 1

Bioinformatics, ChIP-seq, Data visualisation, Data handing, Data mining, Exome sequencing, RNA-Seq

Presentations, demonstrations and practicals

1

A number of times per year

• Introduction to RNA-seq and ChIP-seq data analysis
• Analysis of RNA-seq data with Bioconductor
• Introduction to high-throughput sequencing data analysis