Bioinformatics: EMBL-EBI - Interactions & Pathways - IntAct

This workshop will introduce open-source tools for creating, representing and analysing molecular interaction data. Practical sessions will explore the EMBL-EBI IntAct database and use Cytoscape visualise protein interactions. Further information for this session is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

• Our courses are open to all who might benefit
• Booking priority is given to people from Cambridge University and Collaborating Institutes
• Individual Course fees are required only from External participants not from Collaborating Institutes

The course is aimed to biologists wanting to learn the basics of working with molecular interaction data. No previous knowledge of molecule interactions, IntAct or experience with Cytoscape is required.

• Basic computing skills
• Graduate level in Life Sciences

Number of sessions: 1

After this course you should be able to:

• Identify the types of data, and data formats, found in molecular interaction databases
• Select and apply tools for basic network analysis
• Use Cytoscape to undertake network analysis

Presentations, demonstrations and practicals

0.5

Two times a year

• Bioinformatics: EMBL-EBI - Introduction to EBI Resources
• Bioinformatics: EMBL-EBI - An Introduction to Sequence Searching
• Bioinformatics: EMBL-EBI - Archives for Next Generation Sequence Data with the EBI
• Bioinformatics: EMBL-EBI - Transcriptomics Data and Tools
• Bioinformatics: EMBL-EBI - Protein Databases and Tools
• Bioinformatics: Mass Spectrometry Proteomics at the EBI
• Bioinformatics: EMBL-EBI - Metabolomics Databases and Tools
• Bioinformatics: EMBL-EBI - Bringing Structure to Biology - Protein Structures and Tools
• Bioinformatics: EMBL-EBI - Interactions & Pathways - Reactome
• Bioinformatics: EMBL-EBI - Network Analysis - Cytoscape and PSICQUIC