skip to navigation skip to content
Wed 14 Mar 2018
09:30 - 17:00

Venue: Bioinformatics Training Room, Craik-Marshall Building, Downing Site

Provided by: Bioinformatics


Booking
This course is full - Add me to the waiting list

Other dates:

No more events

[ Show past events ]



Register interest
Register your interest - if you cannot make any of the currently scheduled dates and would be interested in additional dates being scheduled.


Booking / availability

EMBL-EBI: Network Analysis with Cytoscape and PSICQUIC

Wed 14 Mar 2018

Description

This module provides an introduction to the theory and concepts of network analysis. Attendees will learn how to construct protein-protein interaction networks and subsequently use these to analyse large-scale datasets generated these to by techniques such as RNA-Seq or mass-spec proteomics. The course will focus on giving attendees hands-on experience in the use of Cytoscape and selected network analysis apps.

Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

Target audience
  • This workshop is aimed at researchers interested in proteins, network analysis, protein-protein interactions and related areas
  • Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
  • Please be aware that these courses are only free for University of Cambridge students. All other participants will be charged a registration fee in some form. Registration fees and further details regarding the charging policy are available here.
  • Further details regarding eligibility criteria are available here
Prerequisites

Basic knowledge of interaction data resources and techniques is recommended

Sessions

Number of sessions: 1

# Date Time Venue Trainer
1 Wed 14 Mar   09:30 - 17:00 09:30 - 17:00 Bioinformatics Training Room, Craik-Marshall Building, Downing Site map Pablo Porras
Topics covered

Bioinformatics, Pathway or network analysis, Pathway or network visualisation

Objectives

After this course you should be able to:

  • Understand how the PSICQUIC client can help you to integrate molecular interaction data from different public repositories
  • Utilise a range of Cytoscape apps to generate and analyse interaction networks
  • Use a variety of analysis apps within Cytoscape: BINGO, MCODE, ClueGO
Aims

During this course you will learn about:

  • Molecular interaction network analysis
  • PSICQUIC and molecular interaction data integration
  • Basic principles of network analysis
  • Basic Cytoscape functionality and use of apps for clustering and GO enrichment analysis
Format

Presentations, demonstrations and practicals

Registration Fees
  • Free for University of Cambridge students
  • £ 50/day for all University of Cambridge staff, including postdocs, and participants from Affiliated Institutions. Please note that these charges are recovered by us at the Institutional level
  • It remains the participant's responsibility to acquire prior approval from the relevant group leader, line manager or budget holder to attend the course. It is requested that people booking only do so with the agreement of the relevant party as costs will be charged back to your Lab Head or Group Supervisor.
  • £ 50/day for all other academic participants from external Institutions and charitable organizations. These charges must be paid at registration
  • £ 100/day for all Industry participants. These charges must be paid at registration
  • Further details regarding the charging policy are available here
Duration

1

Frequency

A number of times per year

Related

Themes

Booking / availability