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Mon 24 Oct 2016
13:00 - 17:30

Venue: Bioinformatics Training Room, Craik-Marshall Building, Downing Site

Provided by: Bioinformatics


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Mon 5 Feb 2018


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EMBL-EBI: Exploring Protein Sequence and Functional Information with UniProt
Beginners

Mon 24 Oct 2016

Description

This workshop will give an introduction to the resources provided by UniProt. Participants will be shown, and given hands-on experience in, how to navigate the website, search for data and run analysis tools. The session also covers what the sources of our data are and how they are curated. A basic introduction into accessing UniProt Knowledgebase programmatically will be given as well.

Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

Target audience
  • This workshop is aimed at researchers who want to learn more about the UniProt resources
  • Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
  • Further details regarding eligibility criteria are available here
Prerequisites

No previous bioinformatics experience is required, but an undergraduate level understanding of biology would be an advantage

Sessions

Number of sessions: 1

# Date Time Venue Trainers
1 Mon 24 Oct 2016   13:00 - 17:30 13:00 - 17:30 Bioinformatics Training Room, Craik-Marshall Building, Downing Site map Sangya Pundir,  Klemens Pichler
Topics covered

Bioinformatics, Data retrieval, Database search, Proteins

Objectives

After this course you should be able to:

  • Evaluate the differences between the different resources provided by UniProt
  • Browse the UniProt database in detail, learning about its structure and the type of data it contains
  • Select the most appropriate way to access sequence data for a specific purpose (sequence search, text search...)
  • Inter-convert database identifiers to and from UniProt identifiers
Aims

During this course you will learn about:

  • All the UniProt resources, in particular UniProt Knowledgebase (UniProtKB)
  • How to search UniProtKB
  • How to use the analysis tools available in UniProtKB
  • Ways of programmatic access to UniProtKB
  • How to explore new visual representation of positional features including genetic variants and proteomics data from UniProt and other Large Scale Studies
Format

A mixture of presentations and "hands on" exercises

Registration fees
  • Free for University of Cambridge students
  • £ 50/day for all University of Cambridge staff, including postdocs, and participants from Affiliated Institutions. Please note that these charges are recovered by us at the Institutional level
  • £ 50/day for all other academic participants from external Institutions and charitable organizations. These charges must be paid at registration
  • £ 100/day for all Industry participants. These charges must be paid at registration
  • Further details regarding the charging policy are available here
Timetable

Time Topic Trainer
13:30 - 13:55 Introduction to UniProt Sangya Pundir
13:55 - 14:20 Demo – Searching and exploring UniProt data Sangya Pundir
14:20 - 14:40 Hands-on exercises Sanga Pundir, Klemens Pichler
14:40 - 15:00 Expert curation and evidence attribution Klemens Pichler
15:15 - 15:40 Tea/Coffee break
15:40 - 16:05 Demo - UniProt tools Sangya Pundir
16:05 - 16:30 Accessing UniProtKB programmatically Klemens Pichler
17:00 End of workshop
Duration

One half day session

Frequency

Once a year

Related courses
Theme
Databases and Services

Booking / availability