EMBL-EBI: Transcriptomics Data and Tools BeginnersPrerequisites
This workshop will give an introduction to the functional genomics resources provided by EMBL-EBI and hands-on practical experience of searching and accessing appropriate data and information. The session will also cover data submission to ArrayExpress using Annotare.
Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below.
Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.
- This workshop is aimed at researchers who wish to use and submit functional genomics data. This workshop will not however cover the analysis of such data.
- Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
- Further details regarding eligibility criteria are available here
- Further details regarding the charging policy are available here
No previous bioinformatics experience is required, but an undergraduate level understanding of biology would be an advantage
Number of sessions: 1
| # | Date | Time | Venue | Trainer | |
|---|---|---|---|---|---|
| 1 | Tue 15 Dec 2015 09:30 - 17:00 | 09:30 - 17:00 | Bioinformatics Training Room, Craik-Marshall Building | map | Amy Tang |
After this course you should be able to:
- Explore public datasets within Array Express
- Submit your data using Annotare
- Search for expression information using Expression Atlas
During this course you will learn about:
- Exploring public transcriptomic data: ArrayExpress and Expression Atlas
- Submitting your own data to Array Express
Presentations, demonstrations and practicals
0.5
A number of times per year
- EMBL-EBI: Introduction to EMBL-EBI resources
- EMBL-EBI: An Introduction to Sequence Searching
- EMBL-EBI: Interactions & Pathways - Reactome
- EMBL-EBI: Interactions & Pathways - IntAct & Complex Portal
- EMBL-EBI: Protein Sequence Databases with UniProt
- Using the Ensembl Genome Browser (ONLINE LIVE TRAINING)
- EMBL-EBI: Network Analysis with Cytoscape (ONLINE LIVE TRAINING)
- EMBL-EBI: Introduction to Chemogenomics Resources
Booking / availability