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The course will present intermediate to advanced R programming using the object-oriented programming paradigm. It will cover how to document code and data to produce a fully functional R package. Further information is available here.

The Course Web Site providing links to the course materials is here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book register Interest by linking here.

SeqMonk is a graphical program for the visualisation and analysis of large mapped datasets such as ChIP-Seq, RNA-Seq, and BS-Seq. Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

• This course will cover all aspects of The analysis of DNA Methylation using Sequencing. It will cover the primary analysis, mapping and Quality Control (QC) of BS-Seq data and will talk about common pitfalls and complications. It will then cover exploratory analysis of Methylation looking at different methods of Quantitation' and a variety of ways of looking more widely at the distribution of Methylation over the genome. Finally the course will look at statistical methods to predict differential Methylation.
• The course will be comprised of a mixture of theoretical lectures and practicals covering a range of different software packages.
• By the end of the course students should be able to perform an analysis of Methylation Data all the way from raw sequencing to the selection of interesting targets.
• Further information, including a Timetable, will soon be available.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

This course provides an introduction to the tools available through the Bioconductor project for manipulating and analysing high-throughput sequencing data. We will present workflows for the analysis of CHip-Seq and RNA-seq, as well as tools to annotate and visualise results derived from other sequencing experiments (such as DNA resequencing) Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

An introduction the European Molecular Biology Laboratory (EMBL), European Bioinformatics Institute (EBI). The workshop will introduce ways to navigate the website, search EBI database resources and access useful information and metadata. It will also highlight additional resources such as Train Online. Further information is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

A two-day course designed to introduce MATLAB and some basic programming concepts. Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book or register Interest by linking here.

This course provides a gentle and practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core aspects of Python illustrated by a series of example programs. Upon completion of the course, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. Further information is available here.

The Course Web Site providing links to the course materials is here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

This course provides an introduction to the R programming language and software environment for statistical computing and graphics. A variety of examples with a biological theme will be presented. Further information is available here.

The Course Web Site providing links to the course materials is here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book or register Interest by linking here.

This course sets out to introduce simple computing tools for molecular biologists. It is intended for users with a reasonable background in molecular biology but little or no experience of using the available computer resources. The course is based around an investigation into the disease aniridia. We have chosen a well researched human topic as it allows us best to demonstrate how information can be obtained both by analysis of raw sequence data and by interrogation of information resources where previously determined facts are organised and stored. Further information for this session is available.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

An understanding protein structure is vital for the elucidation of its function. Information gleaned from the three dimensional structures of proteins is used to understand the biochemical and functional roles of such molecules in life and for the design and discovery of drug molecules for a variety of diseases and illnesses such as cancer, influenza and tuberculosis.

The Protein Data Bank (PDB) is the central publicly accessible repository of all experimentally derived macromolecular structures. Containing over 80,000 structures of proteins and nucleic acids the PDB is an essential scientific resource.

The PDB is managed by a consortium of international organizations collectively known as the worldwide Protein Data Bank (wwPDB). The Protein Data Bank in Europe (PDBe) is one of the founding members of the wwPDB along with the RCSB Protein Data Bank in the USA and Protein Data Bank Japan(PDBj) in Japan.

In addition to serving as a deposition site for data deposited to the PDB, the PDBe also provides services for the search and analysis of the collective wealth of data contained within the PDB. Further information is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book or register Interest by linking here.

An introduction on how to search EBI databases using sequence search tools. The workshop will introduce tools such as BLAST, FASTA and PSI-BLAST; explain how they function and the ways to make effective use of them to locate different types of biological data and information. Further information is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book or register Interest by linking here.

This session provides an introduction to the European Nucleotide Archive (ENA) record of the world's nucleotide sequencing information, covering raw sequencing data, sequence assembly information and functional annotation available from the Europian Bioinformatics Institute (EBI). Further information for this session is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

This workshop will introduce open-source tools for creating, representing and analysing molecular interaction data. Practical sessions will explore the EMBL-EBI IntAct database and use Cytoscape visualise protein interactions. Further information for this session is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

This workshop will introduce open-source tools for creating, representing and analysing molecular interaction data. Practical sessions will explore the Reactome pathway database, showing participants how to navigate molecular reactions and the pathways they form. Further information for this session is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

This session provides an introduction to Network Analysis at the European Bioinformatics Institute (EBI). Further information for this session is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

• This workshop is aimed at researchers and developers interested in exploring Ensembl beyond the website.
• The workshop covers the Core (Day 1), Variation (Day 2), Functional Genomics (Regulation) (Day3), and Compara (Day4) databases and APIs.
• Each database schema and API design will be presented in association with practical sessions in which the participants will write their own Perl scripts.
• Further information concerning course content is available.

• This course is comprised of 4 one day sessions.
• The first Core API session (or equivalent experience) is a mandatory prerequisite to the other 3 sessions.
• Please specify which of the optional sessions you wish to attend when booking. The default is "all three of them".
• Participants are requested to give us a little information about their background & requirements by registering here.
• The course fee, for those participants required to pay, will be £100 independent of the number of sessions attended.
• The course timetable can be viewed here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

Exploring Protein Sequence and Functional Information with UniProt.

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. UniProt aids scientific discovery by collecting, interpreting and organising protein information in one site so that it is easy to access and use. It provides tools to help with protein sequence analysis as well as links to more than 150 other biological databases to help you access additional information. This course is a guide to the UniProt resource, covering the types of data it provides and how to access the data using the UniProt website. It will go through the protein information and analysis tools available in UniProt in a series of presentations and hands-on exercises.

Further information, including a detailed timetable, is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

Annotators from the Pathogen Genomics Group at the Wellcome Trust Sanger Institute give a comprehensive introduction to the latest Genome Analysis software (Artemis and ACT). Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

• 'Bioinformatics: Genomics in Medicine ' has been approved by the Federation of the Royal Colleges of Physicians of the United Kingdom for 6 category 1 (external) CPD credits.

This course, devised by Life Technologies in conjunction with internationally regarded experts, offers a unique learning opportunity for healthcare professionals who are looking to gain knowledge and practical guidance in genomics and pharmacogenomics. No laboratory work will be involved. The course will be comprised of lectures, demonstrations and discussion activities and will focus on how modern DNA sequencing technologies are impacting clinical medicine. Further information is available here.

Booking for this event:

Raven password holders may book a provisional place on this course for themselves. It would be helpful, and save time if they would also follow the procedures for people without a Raven password, specified as follows.

To apply for a place on this course, please fill in your details here

A place will be reserved for you and you will be contacted as soon as your application has been reviewed.

Successful applicants will be provided with details of how to make payment of the course fee of £200 within 2 working days. Your reservation will be confirmed on receipt of the course fee.

This introductory 1-day course is for people who have recently started working with molecular phylogenetic trees, either estimating their own, working in collaboration with others who estimate them, or reading articles that include trees. Further information is available.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

This course aims to introduce researchers to software and techniques for the analysis of RNA data. More information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

Galaxy (http://galaxyproject.org/) is an open, web-based platform for data intensive life science research that enables non-bioinformaticians to create, run, tune, and share their own bioinformatic analyses. This introductory course will cover Galaxy's basic functionality, simple data manipulation and visualization. This event is mostly targeted at first time users. Further information is available from the course website.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book register Interest by linking here.

The aim of this course is to provide an overview of the applications, laboratory equipment and online bioinformatic portals for metabolomics research. Further information is available.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

This course provides an introduction to next generation sequencing (NGS) data analysis methodologies. Lectures will give insight into how biological knowledge can be generated from RNA-seq, ChIP-seq and BS-seq experiments and illustrate different ways of analyzing such data. Practicals will consist of computer exercises that will enable the participants to apply statistical methods to the analysis of RNA-seq, ChIP-seq and BS-seq data under the guidance of the lecturers and teaching assistants.

Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book or register Interest by linking here.

This course is aimed at those new to programming and provides an introduction to programming using Perl. By the end of this course, attendees should be able to write simple Perl programs and to understand more complex Perl programs written by others. The course will be taught using the online Learning Perl materials created by Sofia Robb of the University of California Riverside. Further information is available.

The Course Web Site providing links to the course materials is here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.